PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042291
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21317.1 Da    PI: 10.4704
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042291genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.61.5e-0861104142
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHH..T-EEEEEEE-T CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLC..daevaviifss 42 
                  krie++s   v fskRrng++KK +    L   ++++av+ fs+
  Lus10042291  61 KRIEDQSSLFVAFSKRRNGLFKKLKKFVSLNekGTQAAVVTFSP 104
                  79*********************888877763357777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.6245390IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-953115IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-1254126IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-85575IPR002100Transcription factor, MADS-box
PfamPF003194.7E-1062110IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-87590IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSPLLGESPS TAMSTAGKLN NDNSNNNNEN ENSSSSSSTA AAVLDRAVVV GGGRRRKIEI  60
KRIEDQSSLF VAFSKRRNGL FKKLKKFVSL NEKGTQAAVV TFSPAANKVH ADGTPAVEPV  120
LRRFLDEIVA GGSEAKLPRQ ATNIGSKRKR TEGRDQMLVL DESEAAWLEF RREVEMRMTE  180
ETVREVRTVN YFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-11M-type_MADS family protein